Before I delve in to what will undoubtably anger the large majority of Nintendo fans, I want to make something clear. I'm not arguing that Windwaker (WW) is more influential or more important than Ocarina of Time (OoT), so put down that pitchfork. My intention is to show off Windwaker's strengths in light of what most people consider the greatest game of all time.
Also, I realize there is a number of you who haven't finished WW or OoT. And for you, I've pre labeled the spoilers in Blue text.
OK! let's get into the nitty gritty.